Index

A

add_carbonate_system_1() (in module esbmtk.carbonate_chemistry) add_carbonate_system_2() (in module esbmtk.carbonate_chemistry) add_carbonate_system_3() (in module esbmtk.carbonate_chemistry) add_connections() (esbmtk.connections.ConnectionProperties method)

add_species() (esbmtk.base_classes.ElementProperties method) add_to() (in module esbmtk.utility_functions) append() (esbmtk.extended_classes.ExternalCode method) area() (esbmtk.sealevel.hypsometry method) area_dz() (esbmtk.sealevel.hypsometry method)

B

Boron() (in module esbmtk.species_definitions) build_concentration_dicts() (in module esbmtk.utility_functions)

build_ct_dict() (in module esbmtk.utility_functions) build_eqs_matrix() (in module esbmtk.ode_backend_2)

C

calc_solubility_term() (esbmtk.seawater.SeawaterConstants method) calc_volumes() (in module esbmtk.utility_functions) Calcium() (in module esbmtk.species_definitions) Carbon() (in module esbmtk.species_definitions) carbonate_system_1() (in module esbmtk.carbonate_chemistry) carbonate_system_1_pp() (in module esbmtk.post_processing) carbonate_system_2() (in module esbmtk.carbonate_chemistry) carbonate_system_2_pp() (in module esbmtk.post_processing) carbonate_system_3() (in module esbmtk.carbonate_chemistry) carbonate_system_3_pp() (in module esbmtk.post_processing) CarbonateSystem2Error check_for_NaN() (in module esbmtk.utility_functions)

check_for_quantity() (in module esbmtk.utility_functions) check_signal_2() (in module esbmtk.ode_backend_2) clear() (esbmtk.model.Model method) co2_solubility_constant() (esbmtk.seawater.SeawaterConstants method) connection_summary() (esbmtk.model.Model method) ConnectionProperties (class in esbmtk.connections) convert_to_lists() (in module esbmtk.utility_functions) create_alialises() (esbmtk.extended_classes.ExternalCode method) create_bulk_connections() (in module esbmtk.utility_functions) create_connection() (in module esbmtk.utility_functions) create_reservoirs() (in module esbmtk.utility_functions) CSVDataError CSVReadError

D

data_summaries() (in module esbmtk.utility_functions) DataField (class in esbmtk.extended_classes) DataFieldError debug() (in module esbmtk.utility_functions) DEFAULT_RTYPE (esbmtk.base_classes.Species attribute) DEFAULT_SCALE_TO (esbmtk.base_classes.SpeciesProperties attribute)

DEFAULT_STYPE (esbmtk.base_classes.SpeciesProperties attribute) delta (esbmtk.base_classes.SourceSink property) (esbmtk.connections.Species2Species property) deprecated_keyword() (in module esbmtk.base_classes) (in module esbmtk.model) dict_alternatives() (in module esbmtk.utility_functions)

E

earth_radius() (in module esbmtk.sealevel) ElementProperties (class in esbmtk.base_classes) ensure_q() (esbmtk.esbmtk_base.esbmtkBase method) epsilon (esbmtk.connections.Species2Species property) esbmtk module esbmtk.base_classes module esbmtk.carbonate_chemistry module esbmtk.connections module esbmtk.esbmtk_base module esbmtk.extended_classes module esbmtk.initialize_unit_registry module esbmtk.model module esbmtk.ode_backend_2 module

esbmtk.post_processing module esbmtk.processes module esbmtk.sealevel module esbmtk.seawater module esbmtk.species_definitions module esbmtk.utility_functions module esbmtk.version module esbmtkBase (class in esbmtk.esbmtk_base) ESBMTKFunctionError expand_dict() (in module esbmtk.utility_functions) ExternalCode (class in esbmtk.extended_classes) ExternalData (class in esbmtk.extended_classes) ExternalDataError

F

find_matching_fluxes() (in module esbmtk.utility_functions) find_matching_strings() (in module esbmtk.utility_functions) Flux (class in esbmtk.base_classes) flux_summary() (esbmtk.base_classes.SpeciesBase method) (esbmtk.model.Model method)

FluxError, [1] FluxNameError FluxSpecificationError fractionate_with_epsilon() (in module esbmtk.utility_functions) full_display_name (esbmtk.base_classes.SpeciesProperties property)

G

gas_exchange() (in module esbmtk.processes) gas_exchange_fluxes() (in module esbmtk.post_processing) GasReservoir (class in esbmtk.extended_classes) GasReservoirError gen_dict_entries() (in module esbmtk.utility_functions) get_box_geometry_parameters() (in module esbmtk.sealevel) get_connection_keys() (in module esbmtk.utility_functions) get_conversion_unit_information() (esbmtk.base_classes.SpeciesBase method) (esbmtk.extended_classes.VectorData method) get_delta() (in module esbmtk.utility_functions) get_delta_from_concentration() (in module esbmtk.utility_functions) get_delta_h() (in module esbmtk.utility_functions) get_delta_values() (esbmtk.model.Model method) get_density() (esbmtk.seawater.SeawaterConstants method) get_flux() (in module esbmtk.ode_backend_2) get_hplus() (in module esbmtk.carbonate_chemistry) get_ic() (in module esbmtk.ode_backend_2) get_imass() (in module esbmtk.utility_functions) get_initial_conditions() (in module esbmtk.ode_backend_2) get_l_mass() (in module esbmtk.utility_functions)

get_longest_dict_entry() (in module esbmtk.utility_functions) get_lookup_table_area() (esbmtk.sealevel.hypsometry method) get_lookup_table_area_dz() (esbmtk.sealevel.hypsometry method) get_name_only() (in module esbmtk.utility_functions) get_new_ratio_from_alpha() (in module esbmtk.utility_functions) get_object_from_list() (in module esbmtk.utility_functions) get_object_handle() (in module esbmtk.utility_functions) get_pco2() (in module esbmtk.carbonate_chemistry) get_plot_layout() (in module esbmtk.utility_functions) get_regular_flux_eq() (in module esbmtk.ode_backend_2) get_reservoir_reference() (in module esbmtk.utility_functions) get_scale_with_concentration_eq() (in module esbmtk.ode_backend_2) get_scale_with_flux_eq() (in module esbmtk.ode_backend_2) get_simple_list() (in module esbmtk.utility_functions) get_species() (esbmtk.connections.Species2Species method) get_string_between_brackets() (in module esbmtk.utility_functions) get_sub_key() (in module esbmtk.utility_functions) get_version() (in module esbmtk.version) get_zcc() (in module esbmtk.carbonate_chemistry) get_zsat() (in module esbmtk.carbonate_chemistry) grid_area() (in module esbmtk.sealevel)

H

help() (esbmtk.esbmtk_base.esbmtkBase method)

Hydrogen() (in module esbmtk.species_definitions) hypsometry (class in esbmtk.sealevel)

I

info() (esbmtk.base_classes.Flux method) (esbmtk.base_classes.SpeciesBase method) (esbmtk.connections.ConnectionProperties method) (esbmtk.connections.Species2Species method) (esbmtk.esbmtk_base.esbmtkBase method) (esbmtk.model.Model method) init_carbonate_system_1() (in module esbmtk.carbonate_chemistry) init_carbonate_system_2() (in module esbmtk.carbonate_chemistry) init_carbonate_system_3() (in module esbmtk.carbonate_chemistry)

init_gas_exchange() (in module esbmtk.processes) init_weathering() (in module esbmtk.processes) initialize_reservoirs() (in module esbmtk.utility_functions) InputError InputParsing (class in esbmtk.esbmtk_base) is_name_in_list() (in module esbmtk.utility_functions) isotopes_regular_flux() (in module esbmtk.ode_backend_2) isotopes_scale_concentration() (in module esbmtk.ode_backend_2) isotopes_scale_flux() (in module esbmtk.ode_backend_2)

K

KeywordError, [1]

L

list_fluxes() (in module esbmtk.utility_functions)

list_species() (esbmtk.base_classes.ElementProperties method) (esbmtk.model.Model method)

M

make_dict() (in module esbmtk.utility_functions) map_units() (in module esbmtk.utility_functions) massto() (esbmtk.base_classes.Species method) misc_variables() (in module esbmtk.species_definitions) MissingKeywordError Model (class in esbmtk.model) ModelError module esbmtk esbmtk.base_classes esbmtk.carbonate_chemistry esbmtk.connections esbmtk.esbmtk_base esbmtk.extended_classes esbmtk.initialize_unit_registry esbmtk.model esbmtk.ode_backend_2 esbmtk.post_processing esbmtk.processes esbmtk.sealevel esbmtk.seawater esbmtk.species_definitions esbmtk.utility_functions esbmtk.version

N

Nitrogen() (in module esbmtk.species_definitions)

O

o2_solubility_constant() (esbmtk.seawater.SeawaterConstants method)

Oxygen() (in module esbmtk.species_definitions)

P

parse_esbmtk_input_data_types() (in module esbmtk.ode_backend_2) phc() (in module esbmtk.carbonate_chemistry) (in module esbmtk.utility_functions) Phosphor() (in module esbmtk.species_definitions)

plot() (esbmtk.extended_classes.ExternalData method) (esbmtk.model.Model method) plot_geometry() (in module esbmtk.utility_functions) post_process_data() (esbmtk.model.Model method) process_slice() (in module esbmtk.sealevel)

R

rate (esbmtk.connections.Species2Species property) read_data() (esbmtk.model.Model method) (esbmtk.sealevel.hypsometry method) read_state() (esbmtk.model.Model method) register_new_flux() (in module esbmtk.utility_functions) register_new_reservoir() (in module esbmtk.utility_functions) register_return_values() (in module esbmtk.utility_functions)

register_user_function() (in module esbmtk.utility_functions) repeat() (esbmtk.extended_classes.Signal method) Reservoir (class in esbmtk.extended_classes) ReservoirError, [1] reverse_key() (in module esbmtk.utility_functions) reverse_tick_labels_factory() (in module esbmtk.utility_functions) rmtree() (in module esbmtk.utility_functions) run() (esbmtk.model.Model method)

S

save_data() (esbmtk.model.Model method) save_state() (esbmtk.model.Model method) scale (esbmtk.connections.Species2Species property) ScaleError, [1] ScaleFluxError SeawaterConstants (class in esbmtk.seawater) set_flux() (esbmtk.esbmtk_base.esbmtkBase method) set_y_limits() (in module esbmtk.utility_functions) show() (esbmtk.seawater.SeawaterConstants method) show_data() (esbmtk.sealevel.hypsometry method) show_dict() (in module esbmtk.utility_functions) Signal (class in esbmtk.extended_classes) signal_data (esbmtk.extended_classes.Signal attribute) SignalError Sink (class in esbmtk.base_classes) SinkProperties (class in esbmtk.extended_classes) slice_count() (in module esbmtk.sealevel) SolverError

sort_by_type() (in module esbmtk.utility_functions) Source (class in esbmtk.base_classes) SourceIsotopeError SourceProperties (class in esbmtk.extended_classes) SourceSink (class in esbmtk.base_classes) SourceSinkProperties (class in esbmtk.extended_classes) SourceSinkPropertiesError Species (class in esbmtk.base_classes) Species2Species (class in esbmtk.connections) Species2SpeciesError SpeciesBase (class in esbmtk.base_classes) SpeciesError SpeciesNoSet (class in esbmtk.extended_classes) SpeciesProperties (class in esbmtk.base_classes) SpeciesPropertiesMolweightError split_key() (in module esbmtk.utility_functions) sub_sample_data() (esbmtk.model.Model method) Sulfur() (in module esbmtk.species_definitions) summarize_results() (in module esbmtk.utility_functions)

T

test_d_pH() (esbmtk.model.Model method)

U

update() (esbmtk.connections.Species2Species method) (esbmtk.extended_classes.VirtualSpecies method)

update_parameter_count() (esbmtk.extended_classes.ExternalCode method) update_parameters() (esbmtk.seawater.SeawaterConstants method)

V

validate() (esbmtk.esbmtk_base.esbmtkBase method) VectorData (class in esbmtk.extended_classes)

VirtualSpecies (class in esbmtk.extended_classes) VirtualSpeciesNoSet (class in esbmtk.extended_classes) volume() (esbmtk.sealevel.hypsometry method)

W

warn_if_non_numeric() (in module esbmtk.utility_functions) water_vapor_partial_pressure() (esbmtk.seawater.SeawaterConstants method) weathering_isotopes() (in module esbmtk.processes) weathering_isotopes_alpha() (in module esbmtk.processes)

weathering_isotopes_delta() (in module esbmtk.processes) weathering_no_isotopes() (in module esbmtk.processes) weathering_ref_isotopes() (in module esbmtk.processes) write_ef() (in module esbmtk.ode_backend_2) write_equations_3() (in module esbmtk.ode_backend_2)